Blobologist-approved reads: Zombies and a flash of light

My ScienceSeeker editor’s picks for this week: The dying turkey edition

What this week’s list lacks in quantity, it makes up for in awesomeness and excellent writing:

 

Animal vision evolved 700 million years ago by Lucas Brouwers at Thoughtomics

On blind light-detectors and the humble beginnings of the animal eye.

Mycoplasma “Ghosts” Can Rise From the Dead by Jennifer Frazer at Artful Amoeba

You know what would be weird? If you could kill an organism until it was dead, empty out its guts until it’s just a hollow shell and then bring it back to ‘life’ again by adding ATP. Yeah, that would be weird.

 

What 9/11 taught us about genetic risk

I study a genetic disease called alpha-1 antitrypsin deficiency. People with antitrypsin deficiency typically suffer from lung diseases, like emphysema, and liver diseases, like cirrhosis. Technically, it is considered a rare disease – around 1 in 4000 people in the US have severe antitrypsin deficiency – but the mutations that cause this disease are actually very common.

How common? About 10% of people in Australia, New Zealand, and North America have at least one copy of a disease-associated mutation in the antitrypsin gene. Only those with two copies of a mutation – one inherited from Mum and one from Dad – will suffer from a severe deficiency of antitrypsin that puts them at very high risk for chronic lung disease. The question is, do all the hundreds of millions of people with only one antitrypsin mutation also experience higher risk for disease?

This question was controversial for some time because most people with only one mutation (called ‘carriers’) do not show obvious signs of respiratory or liver disease. However, over the years it has become clear that even though most carriers will stay healthy, they still bear some increased health risks.

This was most dramatically demonstrated last year, with the publication of a study of rescue workers present at the collapse of the World Trade Center buildings. David Prezant, a Chief Medical Officer at the FDNY, and one those serving on September 11, 2001, led studies of the medical follow-ups, and showed that many rescue workers suffered acute lung damage from the smoke and fine dust produced by the collapse.

For most rescue workers, the bad news was that they never recovered the function that they lost immediately after the attacks. The good news was that they didn’t suffer any further unusual loss in lung function in subsequent years (a small amount of lung function decline is normal with age). But unfortunately, there were also some people that suffered accelerated declines in lung functions long after exposure to the WTC dust. Prezant and his team tested for antitrypsin mutations to see if part of this variability in response could be explained by differences in genetic risk.

The results firmly supported the idea that antitrypsin mutations can affect risk of lung disease even in the absence of full-blown antitrypsin deficiency. Of the 90 participants in the study, 11 had an antitrypsin mutation, but none had antitrypsin deficiency. Of the 11 carriers, those with mutations that have a relatively mild effect on antitrypsin function had double the normal rate of lung function loss over four years. Those with more severe mutations had triple the rate of lung function loss.

The continuing decline of lung function in rescue workers with antitrypsin mutations exposed a previously ‘hidden’ genetic risk. It taught us that even a very low genetic risk for disease can become significant under extreme environmental conditions.

Accelerated Spirometric Decline in New York City Firefighters With α1-Antitrypsin Deficiency

Banauch et al. 2010.  CHEST vol. 138 no. 5 1116-1124

Blobologist-approved Reads: Week of 26 Sep 2011

Even though I haven’t quite finished my first CellTweet for ASCB that is due tomorrow; even though my bum is sore because I insist that I can only be productive while sitting on the floor; even though I need some sleep before another gruelling day of Gaussia luciferase assays in the lab; even though I still haven’t got round to finishing my next proper Blobologist post; I’m still making time to tell you what to read. That’s how dedicated I am to your reading pleasure. You’re welcome.

Make me happy

If you want to make me happy, you’ll read this New York magazine article about distraction. It’s hilarious, interesting and very distracting.

If you really want to make me happy, you’ll join the NYT Science Times in jumping on the ‘solution journalism’ bandwagon. The series is called Small Fixes and is a collection of stories about feel-good, low-tech, high-impact global health solutions. Fold saris into water filters and save the world!

Just so you don’t feel too warm and fuzzy about the Times, you should probably also read one of the several brutal responses to their recent pseudoneuroscience Op-Ed on ‘loving’ your iPhone.

Science, I promise

I keep meaning to write something up about bugs-within-bugs-within-bugs. But then I found this nice piece at Small Things Considered and decided just to link to it.

The second issue of the Science/Lifesyle magazine Guru is out. It looks gorgeous.

Almost Science

If I ever found the time to read a whole book, I would read this book about an epic journey to make the most humble of domestic appliances from scratch. Or I would watch the video highlights.

I’ve always wanted to read this Victorian mathematical fantasy. Instead, I just read about a nice article about it on the Public Domain Review.

The debate about copy-checking and fact-checking in science journalism still hasn’t died down. For example, David Kroll’s follow-up post asks for scientists to join the debate. Some of them even do.

OK, really not science, this time

In The Atlantic, Our Man in Kandahar is a great investigation by Matthieu Aikins into extrajudicial killings and torture by the US ally and Kandahar acting Chief-of-Police Abdul Raziq.

Finally, I wouldn’t normally link to myself, but this time the narcissism is for a good cause. At Steel City Science we’ve decided to join the Science Bloggers for Students challenge, and try to raise some sorely-needed cash for local science classrooms. Honestly, you should read what kind of things these schools are trying to raise money for. You could probably spare a few dollars for some pencil sharpeners.

This Week’s Blobologist-Approved Reads

These are the things I read this week that diverted me the most. Do it, people. Click.

Science News:

The other big Nature story of the week (what speed of light?) – Australian Aboriginal genome suggests multiple waves of human migration into Asia.

Sensitive account of the prosecution of Italian scientists for bungling their pre-earthquake PR.

Retraction Watch collates the news about the ‘Partial retraction’ of the Science paper linking chronic fatigue syndrome to xenotropic murine leukemia-related virus.

It has not escaped the Boston Globe’s attention that in the Biology of Ageing wars, the Sirtuin camp is under fire.  They gave David Sinclair the last ad hominem though:

“This group of researchers makes a living out of putting out these negative papers,’’ he said, “and it’s not the first time they’ve done this and overreached with their conclusions.’’

Book review at the Atlantic – The nocebo effect is invoked to explain the mysterious ‘nocturnal death syndrome’ of American Hmong immigrants.

Exposition:

I’ve got a thing for stories about squid. So how could I resist an Ed Yong piece called Indiscriminate squid just implanting everyone with sperm?

Using viruses to trace neural connections at Big Think

Ice-age antibiotic resistance at Lab Rat

Margot at Hypatian Axis shows us green-glowing-cute-and-cuddly critters and explains the origins of that workhorse of science, green flourescent protein (GFP).

Journal Articles:

Anti-microbial peptides from the genomes of the wallaby and platypus might help fight multi-drug resistant bugs (go the non-eutherians!)

Plant miRNAs could regulate animals that eat them (go plantae!)

Not-science or not-really science:

A post at David Kroll’s PLoS blog about fact-checking with sources for science and technical stories unleased a veritable storm of advice and opinions from high-flying science journalists and writers.

At Brain Pickings: Illustrations of Craigslist Missed Connections. You know, ones like:

‘If the young lady wearing the pink dress, spotted fur cape and muff, had light hair, light complexion and blue eyes, who was in company with a lady dressed in black, that I passed about 5 o’clock on Friday evening in South Seventh Street, between First and Second, Williamsburg, L.I., will address a line to Waldo, Williamsburg Post Office, she will make the acquaintance of a fine young man.’